HPV Target gene Detail Information

> LINC01947 Gene Search Result


Gene Information
Gene Name LINC01947
Gene ID 102557615
Gene Full Name long intergenic non-protein coding RNA 1947
Gene Alias CTB-7E3.1
Transcripts ENSG00000254130
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:52771
lncRNASNP2 ID LINC01947
Target gene [LINC01947] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5004819 chr5 11 0 0 11 View
5010205 chr5 36 4 0 40 View
5011402 chr5 0 0 0 0 View

Target gene [LINC01947] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC01947 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC01947 peak across samples

Peak Plot