HPV Target gene Detail Information

> LINC02054 Gene Search Result


Gene Information
Gene Name LINC02054
Gene ID 105374250
Gene Full Name long intergenic non-protein coding RNA 2054
Gene Alias -
Transcripts ENSG00000224153
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:52894
Target gene [LINC02054] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5017555 chr3 5 1 1 7 View
5017556 chr3 122 240 36 398 View
5017557 chr3 115 216 34 365 View
5017558 chr3 111 127 22 260 View
5017559 chr3 136 123 21 280 View
5017560 chr3 10 0 0 10 View
5017561 chr3 23 3 0 26 View

Target gene [LINC02054] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC02054 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC02054 peak across samples

Peak Plot