HPV Target gene Detail Information

> LINC02141 Gene Search Result


Gene Information
Gene Name LINC02141
Gene ID 101927580
Gene Full Name long intergenic non-protein coding RNA 2141
Gene Alias -
Transcripts ENSG00000261807
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:53001
lncRNASNP2 ID LINC02141
Target gene [LINC02141] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005259 chr16 7 1 0 8 View
5006022 chr16 1 2 0 3 View
5009372 chr16 0 0 0 0 View
5011752 chr16 1 7 3 11 View

Target gene [LINC02141] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC02141 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC02141 peak across samples

Peak Plot