HPV Target gene Detail Information

> LINC02425 Gene Search Result


Gene Information
Gene Name LINC02425
Gene ID 105369810
Gene Full Name long intergenic non-protein coding RNA 2425
Gene Alias -
Transcripts ENSG00000256259
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:53356
lncRNASNP2 ID LINC02425
Target gene [LINC02425] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5009780 chr12 29 35 3 67 View
5010165 chr12 24 29 3 56 View
5010616 chr12 29 35 3 67 View
5010676 chr12 24 29 3 56 View

Target gene [LINC02425] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC02425 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC02425 peak across samples

Peak Plot