HPV Target gene Detail Information

> LINC02476 Gene Search Result


Gene Information
Gene Name LINC02476
Gene ID 105375475
Gene Full Name long intergenic non-protein coding RNA 2476
Gene Alias LVCAT5|lnc-TSPAN12
Transcripts ENSG00000225546
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:53419
Target gene [LINC02476] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005660 chr7 0 0 0 0 View
5005887 chr7 1 0 0 1 View
5006267 chr7 0 0 0 0 View
5010915 chr7 3 3 0 6 View
5010987 chr7 4 19 1 24 View
5012062 chr7 0 0 0 0 View

Target gene [LINC02476] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC02476 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC02476 peak across samples

Peak Plot