HBV Target gene Detail Information

> PCDH11X Gene Search Result


Gene Information
Gene Name PCDH11X
Gene ID 27328
Gene Full Name protocadherin 11 X-linked
Gene Alias PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119
Transcripts ENSG00000102290
Virus HBV
Gene Type protein-coding
HPA Location Info
Membrane Info Predicted membrane proteins
Uniport_ID Q9BZA7
HGNC ID HGNC:8656
OMIM ID 300246
Summary This gene belongs to the protocadherin gene family, a subfamily of the cadherin superfamily. The encoded protein consists of an extracellular domain containing 7 cadherin repeats, a transmembrane domain and a cytoplasmic tail that differs from those of the classical cadherins. The gene is located in a major X/Y block of homology and its Y homolog, despite divergence leading to coding region changes, is the most closely related cadherin family member. The protein is thought to play a fundamental role in cell-cell recognition essential for the segmental development and function of the central nervous system. Disruption of this gene may be associated with developmental dyslexia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2014]
Target gene [PCDH11X] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1006400 chrX 39 0 0 39 View
1010635 chrX 11 0 0 11 View
1018113 chrX 0 0 0 0 View
1018114 chrX 0 0 0 0 View
1018115 chrX 0 0 0 0 View
1018313 chrX 0 0 0 0 View

Target gene [PCDH11X] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE68402 - PCDH11X peak across samples

Peak Plot

> Dataset: GSE100400 - PCDH11X peak across samples

Peak Plot

> Dataset: GSE131257 - PCDH11X peak across samples

Peak Plot