HBV Target gene Detail Information

> PCDH11Y Gene Search Result


Gene Information
Gene Name PCDH11Y
Gene ID 83259
Gene Full Name protocadherin 11 Y-linked
Gene Alias PCDH-PC|PCDH22|PCDHX|PCDHY
Transcripts ENSG00000099715
Virus HBV
Gene Type protein-coding
HPA Location Info
Membrane Info Disease related genes, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9BZA8
HGNC ID HGNC:15813
OMIM ID 400022
Summary This gene belongs to the protocadherin family, a subfamily of the cadherin superfamily. The encoded protein consists of an extracellular domain containing seven cadherin repeats, a transmembrane domain, and a cytoplasmic tail that differs from those of the classical cadherins. This gene is located on the Y chromosome in a block of X/Y homology and is very closely related to its paralog on the X chromosome. The protein is thought to play a role in cell-cell recognition during development of the central nervous system. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]
Target gene [PCDH11Y] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1016506 chrY 0 1 0 1 View
1018104 chrY 0 0 0 0 View
1018116 chrY 0 0 0 0 View
1018314 chrY 0 0 0 0 View
1018442 chrY 0 0 0 0 View
1018443 chrY 0 0 0 0 View
1019457 chrY 0 0 0 0 View

Target gene [PCDH11Y] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
GSE131257 ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE68402 - PCDH11Y peak across samples

Peak Plot