HBV Target gene Detail Information

> SNTG1 Gene Search Result


Gene Information
Gene Name SNTG1
Gene ID 54212
Gene Full Name syntrophin gamma 1
Gene Alias G1SYN|SYN4
Transcripts ENSG00000147481
Virus HBV
Gene Type protein-coding
HPA Location Info
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q9NSN8
HGNC ID HGNC:13740
OMIM ID 608714
Summary The protein encoded by this gene is a member of the syntrophin family. Syntrophins are cytoplasmic peripheral membrane proteins that typically contain 2 pleckstrin homology (PH) domains, a PDZ domain that bisects the first PH domain, and a C-terminal domain that mediates dystrophin binding. This family member plays a role in mediating gamma-enolase trafficking to the plasma membrane and in enhancing its neurotrophic activity. Mutations in this gene are associated with idiopathic scoliosis. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Mar 2016]
Target gene [SNTG1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002504 chr8 192 56 15 263 View
1004201 chr8 57 10 22 89 View
1009253 chr8 13 4 0 17 View
1016686 chr8 1 0 0 1 View
1017968 chr8 0 0 0 0 View
1019902 chr8 0 0 0 0 View
1020890 chr8 0 0 0 0 View
1043344 chr8 0 0 0 0 View

Target gene [SNTG1] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - SNTG1 peak across samples

Peak Plot

> Dataset: GSE68402 - SNTG1 peak across samples

Peak Plot

> Dataset: GSE100400 - SNTG1 peak across samples

Peak Plot

> Dataset: GSE131257 - SNTG1 peak across samples

Peak Plot