HBV Target gene Detail Information

> SOX1-OT Gene Search Result


Gene Information
Gene Name SOX1-OT
Gene ID 100505996
Gene Full Name SOX1 overlapping transcript
Gene Alias LINC00403
Transcripts ENSG00000224243
Virus HBV
Gene Type ncRNA
HGNC ID HGNC:42733
Target gene [SOX1-OT] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1018589 chr13 0 0 0 0 View
1041105 chr13 74 89 37 200 View

Target gene [SOX1-OT] related to Omics data
Data ID Experiment type Sample number Platform
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - SOX1-OT peak across samples

Peak Plot