Viral Sequence Feature Extraction Tool

Data Download

This page allows you to download the data files and scripts of ViSFE.
Term of Usage:
1. You agree NOT to make the ViSFE available to anyone outside your research group. "Make available" includes leaving the data where it may be accessible to outside individuals without your direct knowledge (e.g. on a computer to which people outside your group have login privileges), as well as directly providing it to someone.
2. You agree NOT to build another website using the download data. Please contact us if you are going to.
3. You agree NOT to use the download data for proprietary analysis. You agree to properly cite the Database and its specific, original contributions if directly related to your work.

EBV raw sequence data and feature
Project Group Sequence feature Reference sequence Description
 SRP185895 NPC mutation NC.007605.1 EBV whole genome sequencing (WGS) data was collected from the Sun Yat-sen University Cancer Center, which is available in the SRA database under the accession number SRP185895.
NPC shannon entropy
non-NPC mutation
non-NPC shannon entropy
 Our clinical corhort NPC mutation EBV LMP1 A total of 26 EBV-positive subjects were recruited with 13 EBVaNPC and 13 non-tumor cases with EBV infection (non-NPC).
NPC shannon entropy
non-NPC mutation
non-NPC shannon entropy
ViSFE script Download the scripts and our tutorial notebook, to analyze your own data and calculate the viral sequence feature locally. Instructions for running the code can be found on the Help page, and examples of data runs can be seen on the Demo page.