HTLV1 Target gene Detail Information

> ABCF2 Gene Search Result


Gene Information
Gene Name ABCF2
Gene ID 10061
Gene Full Name ATP binding cassette subfamily F member 2
Gene Alias ABC28|EST133090|HUSSY-18|HUSSY18
Transcripts ENSG00000033050
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Predicted intracellular proteins, Transporters
Uniport_ID Q9UG63
HGNC ID HGNC:71
OMIM ID 612510
Summary This gene encodes a member of the ATP-binding cassette (ABC) transporter superfamily. ATP-binding cassette proteins transport various molecules across extra- and intracellular membranes. Alterations in this gene may be involved in cancer progression. Related pseudogenes have been identified on chromosomes 3 and 7. [provided by RefSeq, Mar 2019]
Target gene [ABCF2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6022512 chr7 5 0 0 5 View

Target gene [ABCF2] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - ABCF2 peak across samples

Peak Plot