HBV Target gene Detail Information

> ARHGEF28 Gene Search Result


Gene Information
Gene Name ARHGEF28
Gene ID 64283
Gene Full Name Rho guanine nucleotide exchange factor 28
Gene Alias RGNEF|RIP2|p190RHOGEF
Transcripts ENSG00000214944
Virus HBV
Gene Type protein-coding
HPA Location Info Microtubules, Cytosol;Plasma membrane;
Membrane Info Predicted intracellular proteins
Uniport_ID Q8N1W1
HGNC ID HGNC:30322
OMIM ID 612790
Summary This gene encodes a member of the Rho guanine nucleotide exchange factor family. The encoded protein interacts with low molecular weight neurofilament mRNA and may be involved in the formation of amyotrophic lateral sclerosis neurofilament aggregates. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Apr 2010]
Target gene [ARHGEF28] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1003870 chr5 19 31 54 104 View
1004496 chr5 22 27 30 79 View
1008924 chr5 18 0 0 18 View
1009115 chr5 17 0 0 17 View
1010135 chr5 6 7 0 13 View
1012759 chr5 6 0 0 6 View

Target gene [ARHGEF28] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
E
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE100400 - ARHGEF28 expression across samples

Volcano Plot

Bar Plot