HBV Target gene Detail Information

> BABAM2 Gene Search Result


Gene Information
Gene Name BABAM2
Gene ID 9577
Gene Full Name BRISC and BRCA1 A complex member 2
Gene Alias BRCC4|BRCC45|BRE
Transcripts ENSG00000158019
Virus HBV
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Metabolic proteins, Predicted intracellular proteins
Uniport_ID Q9NXR7
HGNC ID HGNC:1106
OMIM ID 610497
Summary This gene encodes an anti-apoptotic, death receptor-associated protein that interacts with tumor necrosis factor-receptor-1. The encoded protein acts as an adapter in several protein complexes, including the BRCA1-A complex and the BRISC complex. The BRCA1-A complex possesses ubiquitinase activity and targets sites of double strand DNA breaks, while the BRISC complex exhibits deubiquitinase activity and is involved in mitotic spindle assembly. This gene is upregulated in several types of cancer. [provided by RefSeq, Jun 2016]
Target gene [BABAM2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1013348 chr2 5 0 0 5 View
1014028 chr2 4 0 0 4 View
1042474 chr2 4 19 4 27 View
1042475 chr2 4 15 4 23 View

Target gene [BABAM2] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - BABAM2 peak across samples

Peak Plot

> Dataset: GSE68402 - BABAM2 peak across samples

Peak Plot

> Dataset: GSE270130 - BABAM2 peak across samples

Peak Plot

> Dataset: GSE100400 - BABAM2 peak across samples

Peak Plot

> Dataset: GSE131257 - BABAM2 peak across samples

Peak Plot