HPV Target gene Detail Information

> CASC11 Gene Search Result


Gene Information
Gene Name CASC11
Gene ID 100270680
Gene Full Name cancer susceptibility 11
Gene Alias CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535
Transcripts ENSG00000249375
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:48939
OMIM ID 617704
lncRNASNP2 ID CASC11
Summary Enables chromatin-protein adaptor activity and promoter-enhancer loop anchoring activity. Involved in chromatin looping and positive regulation of transcription by RNA polymerase II. Is active in nucleus. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [CASC11] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5001294 chr8 30 9 0 39 View
5007416 chr8 6 6 0 12 View
5007536 chr8 24 7 11 42 View
5007537 chr8 4 0 0 4 View
5007585 chr8 3 0 0 3 View
5007586 chr8 3 2 0 5 View
5013772 chr8 7 0 0 7 View
5013773 chr8 6 2 0 8 View
5013774 chr8 400 38 23 461 View
5013775 chr8 130 11 2 143 View
5013776 chr8 327 1262 340 1929 View
5013777 chr8 103 10 1 114 View
5013778 chr8 134 8 3 145 View
5013779 chr8 13 1 2 16 View
5013780 chr8 43 40 73 156 View
5013781 chr8 3 1 1 5 View
5013782 chr8 34 7 46 87 View
5013783 chr8 34 7 46 87 View
5013784 chr8 3 1 28 32 View
5016381 chr8 48 24 17 89 View
5016382 chr8 6 9 0 15 View
5017799 chr8 20 111 80 211 View
5017800 chr8 20 111 80 211 View
5017801 chr8 86 10 0 96 View
5017802 chr8 1 7 0 8 View
5017803 chr8 117 158 27 302 View
5017804 chr8 2 13 5 20 View
5017805 chr8 29 24 49 102 View
5017806 chr8 2 3 0 5 View
5017807 chr8 1 3 0 4 View
5017808 chr8 1863 696 769 3328 View
5017809 chr8 114 16 24 154 View
5017810 chr8 25 15 0 40 View

Target gene [CASC11] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - CASC11 peak across samples

Peak Plot

> Dataset: GSE143026 - CASC11 peak across samples

Peak Plot