HTLV1 Target gene Detail Information

> CASC15 Gene Search Result


Gene Information
Gene Name CASC15
Gene ID 401237
Gene Full Name cancer susceptibility 15
Gene Alias CANT|LINC00340|lnc-SOX4-1
Virus HTLV1
Gene Type ncRNA
HGNC ID HGNC:28245
OMIM ID 616610
Summary This gene produces a long non-coding RNA that may regulate cell proliferation. This RNA is upregulated in hepatocellular carcinoma, where it is thought to function as an oncogene. However, some splice variants of this gene may function as a tumor suppressor in neuroblastoma and other tumor types. Circular RNA variants were observed at this gene. [provided by RefSeq, Dec 2017]
Target gene [CASC15] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004497 chr6 1 31 82 114 View
6005062 chr6 37 40 20 97 View
6014158 chr6 13 4 0 17 View
6019188 chr6 7 1 0 8 View
6019820 chr6 2 5 0 7 View
6021971 chr6 0 5 0 5 View

Target gene [CASC15] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - CASC15 peak across samples

Peak Plot