HPV Target gene Detail Information

> CASC21 Gene Search Result


Gene Information
Gene Name CASC21
Gene ID 103021164
Gene Full Name cancer susceptibility 21
Gene Alias CARLO2|CARLo-2|LINC01244
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:49836
OMIM ID 617702
Target gene [CASC21] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000964 chr8 46 15 2 63 View
5001422 chr8 22 9 3 34 View
5001781 chr8 18 4 1 23 View
5003622 chr8 2 0 0 2 View
5003623 chr8 2 0 0 2 View
5003624 chr8 2 0 0 2 View
5003625 chr8 2 0 0 2 View
5007355 chr8 20 14 7 41 View
5009053 chr8 20 14 7 41 View
5010513 chr8 57 1 0 58 View
5011736 chr8 143 8 5 156 View

Target gene [CASC21] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - CASC21 peak across samples

Peak Plot

> Dataset: GSE143026 - CASC21 peak across samples

Peak Plot