HBV Target gene Detail Information

> CDH4 Gene Search Result


Gene Information
Gene Name CDH4
Gene ID 1002
Gene Full Name cadherin 4
Gene Alias CAD4|R-CAD|RCAD
Transcripts ENSG00000179242
Virus HBV
Gene Type protein-coding
HPA Location Info Plasma membrane;
Membrane Info Predicted membrane proteins
Uniport_ID P55283
HGNC ID HGNC:1763
OMIM ID 603006
Summary This gene is a classical cadherin from the cadherin superfamily. The encoded protein is a calcium-dependent cell-cell adhesion glycoprotein comprised of five extracellular cadherin repeats, a transmembrane region and a highly conserved cytoplasmic tail. Based on studies in chicken and mouse, this cadherin is thought to play an important role during brain segmentation and neuronal outgrowth. In addition, a role in kidney and muscle development is indicated. Of particular interest are studies showing stable cis-heterodimers of cadherins 2 and 4 in cotransfected cell lines. Previously thought to interact in an exclusively homophilic manner, this is the first evidence of cadherin heterodimerization. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]
Target gene [CDH4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002136 chr20 304 11 17 332 View
1010813 chr20 6 3 2 11 View
1011200 chr20 6 4 0 10 View
1013261 chr20 2 3 0 5 View
1020368 chr20 9 0 0 9 View
1023560 chr20 304 11 17 332 View
1042670 chr20 489 44 65 598 View
1042671 chr20 29 9 0 38 View

Target gene [CDH4] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE64877 		Chip-seq 2 Illumina Genome Analyzer (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE68402 - CDH4 peak across samples

Peak Plot

> Dataset: GSE64877 - CDH4 peak across samples

Peak Plot

> Dataset: GSE100400 - CDH4 peak across samples

Peak Plot

> Dataset: GSE131257 - CDH4 peak across samples

Peak Plot