HBV Target gene Detail Information

> CNTN4 Gene Search Result


Gene Information
Gene Name CNTN4
Gene ID 152330
Gene Full Name contactin 4
Gene Alias AXCAM|BIG-2
Transcripts ENSG00000144619
Virus HBV
Gene Type protein-coding
HPA Location Info Intracellular and membrane;
Membrane Info Disease related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID Q8IWV2
HGNC ID HGNC:2174
OMIM ID 607280
Summary This gene encodes a member of the contactin family of immunoglobulins. Contactins are axon-associated cell adhesion molecules that function in neuronal network formation and plasticity. The encoded protein is a glycosylphosphatidylinositol-anchored neuronal membrane protein that may play a role in the formation of axon connections in the developing nervous system. Deletion or mutation of this gene may play a role in 3p deletion syndrome and autism spectrum disorders. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2011]
Target gene [CNTN4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1008458 chr3 18 2 0 20 View
1011249 chr3 7 2 0 9 View
1015394 chr3 2 0 0 2 View
1015540 chr3 2 0 0 2 View
1015716 chr3 2 0 0 2 View
1022430 chr3 18 2 0 20 View
1023826 chr3 7 2 0 9 View
1042726 chr3 9 5 0 14 View
1042727 chr3 21 1 0 22 View

Target gene [CNTN4] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE68402 - CNTN4 peak across samples

Peak Plot

> Dataset: GSE270130 - CNTN4 peak across samples

Peak Plot

> Dataset: GSE100400 - CNTN4 peak across samples

Peak Plot

> Dataset: GSE131257 - CNTN4 peak across samples

Peak Plot