HBV Target gene Detail Information

> CNTN5 Gene Search Result


Gene Information
Gene Name CNTN5
Gene ID 53942
Gene Full Name contactin 5
Gene Alias HNB-2s|NB-2
Transcripts ENSG00000149972
Virus HBV
Gene Type protein-coding
HPA Location Info Intracellular and membrane;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID O94779
HGNC ID HGNC:2175
OMIM ID 607219
Summary The protein encoded by this gene is a member of the immunoglobulin superfamily, and contactin family, which mediate cell surface interactions during nervous system development. This protein is a glycosylphosphatidylinositol (GPI)-anchored neuronal membrane protein that functions as a cell adhesion molecule. It may play a role in the formation of axon connections in the developing nervous system. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Aug 2011]
Target gene [CNTN5] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1007201 chr11 8 14 7 29 View
1007202 chr11 8 14 7 29 View
1014778 chr11 0 3 0 3 View
1017118 chr11 1 0 0 1 View
1017888 chr11 0 0 0 0 View
1018056 chr11 0 0 0 0 View
1019112 chr11 0 0 0 0 View
1019715 chr11 0 0 0 0 View
1020409 chr11 4 2 0 6 View
1020410 chr11 65 4 5 74 View
1021559 chr11 0 0 0 0 View
1041043 chr11 2 8 27 37 View
1041044 chr11 0 0 0 0 View

Target gene [CNTN5] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
E
 
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE100400 - CNTN5 expression across samples

Volcano Plot

Bar Plot