HTLV1 Target gene Detail Information

> COL28A1 Gene Search Result


Gene Information
Gene Name COL28A1
Gene ID 340267
Gene Full Name collagen type XXVIII alpha 1 chain
Gene Alias COL28
Transcripts ENSG00000215018
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;Nucleoplasm;Secreted to extracellular matrix;
Membrane Info Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID Q2UY09
HGNC ID HGNC:22442
OMIM ID 609996
Summary COL28A1 belongs to a class of collagens containing von Willebrand factor (VWF; MIM 613160) type A (VWFA) domains (Veit et al., 2006 [PubMed 16330543]).[supplied by OMIM, Nov 2010]
Target gene [COL28A1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6016747 chr7 4 7 1 12 View
6021706 chr7 2 3 0 5 View

Target gene [COL28A1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - COL28A1 peak across samples

Peak Plot