HPV Target gene Detail Information

> COP1 Gene Search Result


Gene Information
Gene Name COP1
Gene ID 64326
Gene Full Name COP1 E3 ubiquitin ligase
Gene Alias CFAP78|FAP78|RFWD2|RNF200
Transcripts ENSG00000143207
Virus HPV
Gene Type protein-coding
HPA Location Info
Membrane Info Enzymes, Metabolic proteins, Predicted intracellular proteins
Uniport_ID Q8NHY2
HGNC ID HGNC:17440
OMIM ID 608067
Summary Enables ubiquitin protein ligase activity. Involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; proteasome-mediated ubiquitin-dependent protein catabolic process; and response to ionizing radiation. Part of Cul4A-RING E3 ubiquitin ligase complex. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [COP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5002137 chr1 14 1 0 15 View
5010712 chr1 0 3 1 4 View

Target gene [COP1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - COP1 peak across samples

Peak Plot

> Dataset: GSE143026 - COP1 peak across samples

Peak Plot