HPV Target gene Detail Information

> GACAT3 Gene Search Result


Gene Information
Gene Name GACAT3
Gene ID 104797537
Gene Full Name gastric cancer associated transcript 3
Gene Alias LINC01458|lncRNA-AC130710
Transcripts ENSG00000236289
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:50847
OMIM ID 616132
lncRNASNP2 ID GACAT3
Target gene [GACAT3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5010096 chr2 5 0 0 5 View

Target gene [GACAT3] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - GACAT3 peak across samples

Peak Plot

> Dataset: GSE143026 - GACAT3 peak across samples

Peak Plot