HPV Target gene Detail Information

> GAPLINC Gene Search Result


Gene Information
Gene Name GAPLINC
Gene ID 100505592
Gene Full Name gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA
Gene Alias LINC01540
Transcripts ENSG00000266835
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:51308
lncRNASNP2 ID GAPLINC
Target gene [GAPLINC] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5006804 chr18 5 2 0 7 View

Target gene [GAPLINC] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - GAPLINC peak across samples

Peak Plot