HBV Target gene Detail Information

> GGTA1 Gene Search Result


Gene Information
Gene Name GGTA1
Gene ID 2681
Gene Full Name glycoprotein alpha-galactosyltransferase 1 (inactive)
Gene Alias GGTA|GGTA1P|GLYT2|a1/3GTP
Transcripts ENSG00000204136
Virus HBV
Gene Type protein-coding
HPA Location Info Plasma membrane, Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q4G0N0
HGNC ID HGNC:4253
OMIM ID 104175
Summary Alpha-1,3-galactosyltransferase (GGTA1) is an enzyme present in most mammals except man, apes, and Old World monkeys. This gene is thought to encode a truncated, non-enzymatic form of the GGTA1 protein that lacks the C-terminal catalytic domain. Aberrant expression of the GGTA1 protein in man can lead to autoimmune diseases and sometimes germ cell tumors. [provided by RefSeq, May 2020]
Target gene [GGTA1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1005528 chr9 37 4 11 52 View
1005529 chr9 35 3 14 52 View

Target gene [GGTA1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - GGTA1 peak across samples

Peak Plot

> Dataset: GSE68402 - GGTA1 peak across samples

Peak Plot

> Dataset: GSE270130 - GGTA1 peak across samples

Peak Plot

> Dataset: GSE131257 - GGTA1 peak across samples

Peak Plot