HBV Target gene Detail Information

> LGSN Gene Search Result


Gene Information
Gene Name LGSN
Gene ID 51557
Gene Full Name lengsin, lens protein with glutamine synthetase domain
Gene Alias GLULD1|LGS
Transcripts ENSG00000146166
Virus HBV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Vesicles;
Membrane Info Predicted intracellular proteins
Uniport_ID Q5TDP6
HGNC ID HGNC:21016
OMIM ID 611470
Summary This gene encodes a protein with similarity to the GS I members of the glutamine synthetase superfamily. The encoded protein is referred to as a pseudo-glutamine synthetase because it has no glutamine synthesis activity and may function as a chaperone protein. This protein is localized to the lens and may be associated with cataract disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2009]
Target gene [LGSN] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1014721 chr6 2 1 0 3 View
1019639 chr6 0 0 0 0 View

Target gene [LGSN] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - LGSN peak across samples

Peak Plot

> Dataset: GSE68402 - LGSN peak across samples

Peak Plot

> Dataset: GSE270130 - LGSN peak across samples

Peak Plot

> Dataset: GSE100400 - LGSN peak across samples

Peak Plot

> Dataset: GSE131257 - LGSN peak across samples

Peak Plot