HPV Target gene Detail Information

> LINC00395 Gene Search Result


Gene Information
Gene Name LINC00395
Gene ID 100874157
Gene Full Name long intergenic non-protein coding RNA 395
Gene Alias -
Transcripts ENSG00000231061
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:42723
Target gene [LINC00395] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5012675 chr13 2 2 0 4 View
5012676 chr13 13 13 1 27 View
5012677 chr13 13 13 1 27 View
5012678 chr13 1 4 0 5 View
5012679 chr13 9 1 1 11 View
5012680 chr13 1 4 1 6 View
5012681 chr13 1 5 0 6 View
5012682 chr13 1 3 1 5 View
5012683 chr13 1 3 0 4 View

Target gene [LINC00395] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC00395 peak across samples

Peak Plot