HBV Target gene Detail Information

> LINC00533 Gene Search Result


Gene Information
Gene Name LINC00533
Gene ID 387055
Gene Full Name long intergenic non-protein coding RNA 533
Gene Alias C6orf38|C6orf39
Transcripts ENSG00000235570
Virus HBV
Gene Type ncRNA
HGNC ID HGNC:18690
Target gene [LINC00533] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1020582 chr6 358 80 14 452 View

Target gene [LINC00533] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - LINC00533 peak across samples

Peak Plot

> Dataset: GSE68402 - LINC00533 peak across samples

Peak Plot

> Dataset: GSE100400 - LINC00533 peak across samples

Peak Plot

> Dataset: GSE131257 - LINC00533 peak across samples

Peak Plot

> Dataset: GSE270130 - LINC00533 peak across samples

Peak Plot