HPV Target gene Detail Information

> LINC00539 Gene Search Result


Gene Information
Gene Name LINC00539
Gene ID 100652865
Gene Full Name long intergenic non-protein coding RNA 539
Gene Alias LINC00422
Transcripts ENSG00000224429
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:43672
lncRNASNP2 ID LINC00539
Target gene [LINC00539] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5014934 chr13 17 5 14 36 View

Target gene [LINC00539] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE226620 scRNA-seq 30 HiSeq X Ten (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC00539 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC00539 peak across samples

Peak Plot