HTLV1 Target gene Detail Information

> LINC00578 Gene Search Result


Gene Information
Gene Name LINC00578
Gene ID 100505566
Gene Full Name long intergenic non-protein coding RNA 578
Gene Alias -
Transcripts ENSG00000228221
Virus HTLV1
Gene Type ncRNA
HGNC ID HGNC:43807
lncRNASNP2 ID LINC00578
Target gene [LINC00578] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6000909 chr3 278 165 278 721 View
6001520 chr3 39 193 179 411 View
6001609 chr3 24 240 122 386 View
6008552 chr3 33 11 0 44 View
6010064 chr3 0 18 15 33 View
6029103 chr3 0 1 0 1 View

Target gene [LINC00578] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - LINC00578 peak across samples

Peak Plot