HPV Target gene Detail Information

> LINC01216 Gene Search Result


Gene Information
Gene Name LINC01216
Gene ID 100874275
Gene Full Name long intergenic non-protein coding RNA 1216
Gene Alias EMCN-IT3
Transcripts ENSG00000250223
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:41418
Target gene [LINC01216] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005152 chr4 5 1 0 6 View
5011828 chr4 61 11 3 75 View

Target gene [LINC01216] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC01216 peak across samples

Peak Plot