HPV Target gene Detail Information

> LINC01242 Gene Search Result


Gene Information
Gene Name LINC01242
Gene ID 401497
Gene Full Name long intergenic non-protein coding RNA 1242
Gene Alias -
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:49810
Target gene [LINC01242] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5004907 chr9 125 21 6 152 View
5005029 chr9 137 19 36 192 View
5005472 chr9 5 12 0 17 View
5005757 chr9 0 0 0 0 View
5010588 chr9 3 1 0 4 View
5010590 chr9 10 10 0 20 View
5017865 chr9 29 3 1 33 View
5017866 chr9 2 0 0 2 View
5017867 chr9 0 0 0 0 View
5017868 chr9 0 0 0 0 View

Target gene [LINC01242] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC01242 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC01242 peak across samples

Peak Plot