HPV Target gene Detail Information

> LINC01248 Gene Search Result


Gene Information
Gene Name LINC01248
Gene ID 102723818
Gene Full Name long intergenic non-protein coding RNA 1248
Gene Alias -
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:49842
Target gene [LINC01248] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5011271 chr2 93 31 3 127 View

Target gene [LINC01248] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE143026 ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
M
  GSE169622 		Methylation profiling (Array) 9 Infinium MethylationEPIC


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE169622 - LINC01248 methylation across samples

Volcano Plot (delta beta value > 0.2 & FDR < 0.05)

Bar Plot (delta beta value > 0.2)