HPV Target gene Detail Information

> LINC01309 Gene Search Result


Gene Information
Gene Name LINC01309
Gene ID 104326190
Gene Full Name long intergenic non-protein coding RNA 1309
Gene Alias TCONS_l2_00007459
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:50497
Target gene [LINC01309] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005316 chr13 5 12 1 18 View
5006203 chr13 9 0 1 10 View
5010307 chr13 4 0 0 4 View
5010366 chr13 0 0 0 0 View
5010398 chr13 0 4 0 4 View
5010399 chr13 317 45 171 533 View
5011791 chr13 1 1 0 2 View
5011827 chr13 1 0 1 2 View

Target gene [LINC01309] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC01309 peak across samples

Peak Plot