HPV Target gene Detail Information

> LINC01317 Gene Search Result


Gene Information
Gene Name LINC01317
Gene ID 104355287
Gene Full Name long intergenic non-protein coding RNA 1317
Gene Alias -
Transcripts ENSG00000228262
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:50523
Target gene [LINC01317] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5003800 chr2 2 0 0 2 View
5004532 chr2 0 0 0 0 View
5004533 chr2 0 0 0 0 View
5004534 chr2 0 0 0 0 View

Target gene [LINC01317] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC01317 peak across samples

Peak Plot