HPV Target gene Detail Information

> LINC01378 Gene Search Result


Gene Information
Gene Name LINC01378
Gene ID 103689918
Gene Full Name long intergenic non-protein coding RNA 1378
Gene Alias -
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:50645
Target gene [LINC01378] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5006224 chr4 0 0 0 0 View
5011073 chr4 1 0 1 2 View
5015956 chr4 36 19 2 57 View

Target gene [LINC01378] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC01378 peak across samples

Peak Plot