HPV Target gene Detail Information

> LINC01389 Gene Search Result


Gene Information
Gene Name LINC01389
Gene ID 102724077
Gene Full Name long intergenic non-protein coding RNA 1389
Gene Alias -
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:50661
Target gene [LINC01389] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5016941 chr1 155 17 37 209 View
5016942 chr1 13 3 0 16 View
5016943 chr1 5 3 0 8 View
5016946 chr1 56 8 1 65 View
5016947 chr1 55 8 2 65 View
5016948 chr1 108 9 4 121 View

Target gene [LINC01389] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC01389 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC01389 peak across samples

Peak Plot