HPV Target gene Detail Information

> LINC01411 Gene Search Result


Gene Information
Gene Name LINC01411
Gene ID 101928176
Gene Full Name long intergenic non-protein coding RNA 1411
Gene Alias -
Transcripts ENSG00000249306
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:50703
lncRNASNP2 ID LINC01411
Target gene [LINC01411] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5002185 chr5 9 4 1 14 View
5002986 chr5 3 3 0 6 View
5010306 chr5 8 15 0 23 View

Target gene [LINC01411] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC01411 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC01411 peak across samples

Peak Plot