HPV Target gene Detail Information

> LINC01574 Gene Search Result


Gene Information
Gene Name LINC01574
Gene ID 102577424
Gene Full Name long intergenic non-protein coding RNA 1574
Gene Alias HI-LNC12
Transcripts ENSG00000248859
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:51388
lncRNASNP2 ID LINC01574
Target gene [LINC01574] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5011268 chr5 7 1 0 8 View

Target gene [LINC01574] related to Omics data
Data ID Experiment type Sample number Platform
E
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - LINC01574 expression across samples

Volcano Plot

Bar Plot