HPV Target gene Detail Information

> LINC01876 Gene Search Result


Gene Information
Gene Name LINC01876
Gene ID 101929378
Gene Full Name long intergenic non-protein coding RNA 1876
Gene Alias uc.83
Transcripts ENSG00000226383
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:52695
lncRNASNP2 ID LINC01876
Target gene [LINC01876] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005567 chr2 39 1 0 40 View
5006259 chr2 0 1 0 1 View
5017399 chr2 2 0 1 3 View
5017400 chr2 1 6 0 7 View
5017401 chr2 6 2 3 11 View
5017402 chr2 27 10 2 39 View
5017403 chr2 30 12 2 44 View
5017404 chr2 15 5 0 20 View
5017405 chr2 11 2 0 13 View
5017406 chr2 462 14 7 483 View

Target gene [LINC01876] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048
Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
E
  TCGA_CESC
DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026
ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - LINC01876 expression across samples

Volcano Plot


Bar Plot