HPV Target gene Detail Information

> LINC02239 Gene Search Result


Gene Information
Gene Name LINC02239
Gene ID 340107
Gene Full Name long intergenic non-protein coding RNA 2239
Gene Alias -
Transcripts ENSG00000248908
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:27969
Target gene [LINC02239] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5010304 chr5 0 0 0 0 View

Target gene [LINC02239] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC02239 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC02239 peak across samples

Peak Plot