HTLV1 Target gene Detail Information

> LRFN1 Gene Search Result


Gene Information
Gene Name LRFN1
Gene ID 57622
Gene Full Name leucine rich repeat and fibronectin type III domain containing 1
Gene Alias SALM2
Transcripts ENSG00000128011
Virus HTLV1
Gene Type protein-coding
HPA Location Info
Membrane Info Predicted membrane proteins
Uniport_ID Q9P244
HGNC ID HGNC:29290
OMIM ID 612807
Summary Predicted to be involved in regulation of postsynaptic density assembly. Predicted to be located in plasma membrane. Predicted to be active in cell surface; postsynaptic density membrane; and presynaptic active zone membrane. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [LRFN1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6015680 chr19 13 0 0 13 View
6015694 chr19 13 0 0 13 View
6015718 chr19 13 0 0 13 View
6015723 chr19 13 0 0 13 View
6015732 chr19 13 0 0 13 View
6015735 chr19 13 0 0 13 View
6015736 chr19 13 0 0 13 View

Target gene [LRFN1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - LRFN1 peak across samples

Peak Plot