HTLV1 Target gene Detail Information

> LRMDA Gene Search Result


Gene Information
Gene Name LRMDA
Gene ID 83938
Gene Full Name leucine rich melanocyte differentiation associated
Gene Alias C10orf11|CDA017
Transcripts ENSG00000148655
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Cytosol;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID Q9H2I8
HGNC ID HGNC:23405
OMIM ID 614537
Summary This gene encodes a leucine-rich repeat protein. The encoded protein is thought to play a role in melanocyte differentiation. Mutations in this gene have been associated with autosomal recessive oculocutaneous albinism 7 (OCA7). Alternatively spliced transcript variants have been identified. [provided by RefSeq, Mar 2015]
Target gene [LRMDA] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6006598 chr10 24 40 2 66 View
6008375 chr10 46 0 0 46 View
6016297 chr10 9 3 0 12 View
6030034 chr10 0 1 0 1 View
6031133 chr10 0 0 0 0 View

Target gene [LRMDA] related to Omics data
Data ID Experiment type Sample number Platform
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - LRMDA peak across samples

Peak Plot