HBV Target gene Detail Information

> LRRC4C Gene Search Result


Gene Information
Gene Name LRRC4C
Gene ID 57689
Gene Full Name leucine rich repeat containing 4C
Gene Alias NGL-1|NGL1
Transcripts ENSG00000148948
Virus HBV
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9HCJ2
HGNC ID HGNC:29317
OMIM ID 608817
Summary NGL1 is a specific binding partner for netrin G1 (NTNG1; MIM 608818), which is a member of the netrin family of axon guidance molecules (Lin et al., 2003 [PubMed 14595443]).[supplied by OMIM, Mar 2008]
Target gene [LRRC4C] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1009112 chr11 12 3 2 17 View
1011064 chr11 7 3 0 10 View
1013141 chr11 4 1 0 5 View
1014492 chr11 2 1 0 3 View
1016833 chr11 0 1 0 1 View
1018050 chr11 0 0 0 0 View
1020964 chr11 4 1 0 5 View
1020965 chr11 2 1 0 3 View
1041877 chr11 0 0 0 0 View
1041878 chr11 0 0 1 1 View
1041879 chr11 13 3 2 18 View

Target gene [LRRC4C] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - LRRC4C peak across samples

Peak Plot

> Dataset: GSE68402 - LRRC4C peak across samples

Peak Plot

> Dataset: GSE270130 - LRRC4C peak across samples

Peak Plot

> Dataset: GSE100400 - LRRC4C peak across samples

Peak Plot

> Dataset: GSE131257 - LRRC4C peak across samples

Peak Plot