HPV Target gene Detail Information

> MACROD2-IT1 Gene Search Result


Gene Information
Gene Name MACROD2-IT1
Gene ID 140848
Gene Full Name MACROD2 intronic transcript 1
Gene Alias C20orf68|NCRNA00227|bA467D7.4
Transcripts ENSG00000227927
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:16201
lncRNASNP2 ID MACROD2-IT1
Target gene [MACROD2-IT1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5008314 chr20 13 1 4 18 View
5009047 chr20 26 5 10 41 View
5010439 chr20 7 0 0 7 View
5013308 chr20 19 15 2 36 View
5013309 chr20 113 186 51 350 View
5015651 chr20 49 6 12 67 View

Target gene [MACROD2-IT1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - MACROD2-IT1 peak across samples

Peak Plot

> Dataset: GSE143026 - MACROD2-IT1 peak across samples

Peak Plot