HTLV1 Target gene Detail Information

> MIR548F5 Gene Search Result


Gene Information
Gene Name MIR548F5
Gene ID 100302239
Gene Full Name microRNA 548f-5
Gene Alias MIR548F-5|MIRN548F5|hsa-mir-548f-5
Transcripts ENSG00000221348
Virus HTLV1
Gene Type ncRNA
HGNC ID HGNC:35309
Summary microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Target gene [MIR548F5] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6001512 chr13 3 253 156 412 View
6004317 chr13 54 7 59 120 View
6004318 chr13 54 7 59 120 View
6007380 chr13 20 16 20 56 View
6008101 chr13 29 17 2 48 View
6010223 chr13 31 1 0 32 View
6011410 chr13 5 19 2 26 View
6019757 chr13 3 1 3 7 View
6019982 chr13 5 2 0 7 View
6020876 chr13 0 3 3 6 View
6024526 chr13 2 1 0 3 View
6032794 chr13 0 0 0 0 View

Target gene [MIR548F5] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - MIR548F5 peak across samples

Peak Plot