HTLV1 Target gene Detail Information

> NEAT1 Gene Search Result


Gene Information
Gene Name NEAT1
Gene ID 283131
Gene Full Name nuclear paraspeckle assembly transcript 1
Gene Alias LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC
Transcripts ENSG00000245532
Virus HTLV1
Gene Type ncRNA
HGNC ID HGNC:30815
OMIM ID 612769
lncRNASNP2 ID NEAT1
Summary This gene produces a long non-coding RNA (lncRNA) transcribed from the multiple endocrine neoplasia locus. This lncRNA is retained in the nucleus where it forms the core structural component of the paraspeckle sub-organelles. It may act as a transcriptional regulator for numerous genes, including some genes involved in cancer progression. [provided by RefSeq, Mar 2015]
Target gene [NEAT1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6033573 chr11 405 1095 96 1596 View
6033574 chr11 383 40 7 430 View

Target gene [NEAT1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - NEAT1 peak across samples

Peak Plot