HTLV1 Target gene Detail Information

> NUP188 Gene Search Result


Gene Information
Gene Name NUP188
Gene ID 23511
Gene Full Name nucleoporin 188
Gene Alias KIAA0169|SANDSTEF|hNup188
Transcripts ENSG00000095319
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nucleoli, Cytosol;
Membrane Info Disease related genes, Metabolic proteins, Potential drug targets, Predicted intracellular proteins, Transporters
Uniport_ID Q5SRE5
HGNC ID HGNC:17859
OMIM ID 615587
Summary The nuclear pore complex (NPC) is found on the nuclear envelope and forms a gateway that regulates the flow of proteins and RNAs between the cytoplasm and nucleoplasm. The NPC is comprised of approximately 30 distinct proteins collectively known as nucleoporins. Nucleoporins are pore-complex-specific glycoproteins which often have cytoplasmically oriented O-linked N-acetylglucosamine residues and numerous repeats of the pentapeptide sequence XFXFG. However, the nucleoporin protein encoded by this gene does not contain the typical FG repeat sequences found in most vertebrate nucleoporins. This nucleoporin is thought to form part of the scaffold for the central channel of the nuclear pore. [provided by RefSeq, Jan 2013]
Target gene [NUP188] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002987 chr9 80 102 11 193 View
6015316 chr9 14 0 0 14 View

Target gene [NUP188] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - NUP188 peak across samples

Peak Plot