HPV Target gene Detail Information

> PALS1 Gene Search Result


Gene Information
Gene Name PALS1
Gene ID 64398
Gene Full Name protein associated with LIN7 1, MAGUK p55 family member
Gene Alias MPP5
Transcripts ENSG00000072415
Virus HPV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Plasma membrane;Cell Junctions, Cytosol;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q8N3R9
HGNC ID HGNC:18669
OMIM ID 606958
Summary This gene encodes a member of the p55-like subfamily of the membrane-associated guanylate kinase (MAGUK) gene superfamily. The encoded protein participates in the polarization of differentiating cells, has been shown to regulate myelinating Schwann cells (PMID: 20237282), and is one of the components of the Crumbs complex in the retina. Mice which express lower levels of the orthologous protein have retinal degeneration and impaired vision (PMID: 22114289). Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2012]
Target gene [PALS1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5004799 chr14 5 13 1 19 View

Target gene [PALS1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - PALS1 peak across samples

Peak Plot

> Dataset: GSE143026 - PALS1 peak across samples

Peak Plot