HBV Target gene Detail Information

> PCAT29 Gene Search Result


Gene Information
Gene Name PCAT29
Gene ID 104472713
Gene Full Name prostate cancer associated transcript 29
Gene Alias -
Transcripts ENSG00000245750
Virus HBV
Gene Type ncRNA
HGNC ID HGNC:50895
OMIM ID 616273
Summary This gene is thought to produce a functional long non-coding RNA. This transcript was identified in prostate cancer cells and may suppress tumor formation. [provided by RefSeq, Feb 2015]
Target gene [PCAT29] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1005995 chr15 4 15 26 45 View
1005996 chr15 4 15 26 45 View
1005997 chr15 4 15 26 45 View

Target gene [PCAT29] related to Omics data
Data ID Experiment type Sample number Platform
GSE252863 scRNA-seq 10 Illumina HiSeq 2500 (Homo sapiens)
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - PCAT29 peak across samples

Peak Plot

> Dataset: GSE131257 - PCAT29 peak across samples

Peak Plot