HBV Target gene Detail Information

> PCBP3 Gene Search Result


Gene Information
Gene Name PCBP3
Gene ID 54039
Gene Full Name poly(rC) binding protein 3
Gene Alias ALPHA-CP3|PCBP3-OT1|PCBP3OT
Transcripts ENSG00000183570
Virus HBV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Mitochondria;Vesicles;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID P57721
HGNC ID HGNC:8651
OMIM ID 608502
Summary This gene encodes a member of the KH-domain protein subfamily. Proteins of this subfamily, also referred to as alpha-CPs, bind to RNA with a specificity for C-rich pyrimidine regions. Alpha-CPs play important roles in post-transcriptional activities and have different cellular distributions. The protein encoded by this gene lacks the nuclear localization signals found in other subfamily members. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jan 2017]
Target gene [PCBP3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1008987 chr21 4 14 0 18 View
1010190 chr21 5 5 3 13 View

Target gene [PCBP3] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - PCBP3 peak across samples

Peak Plot

> Dataset: GSE68402 - PCBP3 peak across samples

Peak Plot

> Dataset: GSE270130 - PCBP3 peak across samples

Peak Plot

> Dataset: GSE100400 - PCBP3 peak across samples

Peak Plot

> Dataset: GSE131257 - PCBP3 peak across samples

Peak Plot